The outfiles that are the CONSENSE software results file from the

The outfiles that are the CONSENSE software results file from the phylogenetic trees from the phylogenetic analysis of housekeeping (Figure 1), pldA (Figure 2a and b), OMPLA (Figure 3) and AtpA (Figure 4). (RTF 405 kb) (RTF 406 KB) Additional file 5 Figure S2: Phylogenetic tree of this website Proteobacteria OMPLA sequences. Additional file 5 is a strict analysis of the OMPLA sequences found Figure 3. In this analysis, a higher threshold is used where only groups occurring more than 75% is included (M75). (PNG 1253 kb) (PNG 1 MB) Additional file 6 Figure S3: Phylogenetic tree of Proteobacteria AtpA sequences. Additional file 5 is a strict analysis (M75) of the OMPLA sequences found Figure

4. (PNG 903 kb) (PNG 904 KB) Additional file 7 Figure S1: Phylogenetic tree of H. pylori housekeeping sequences. Additional file 7 supplements Figure 1 with complete labelling. (PDF 127 KB) References 1. Yoshiyama H, Nakazawa T: Unique mechanism Nutlin-3a in vivo of Helicobacter pylori for colonizing the gastric mucus. Microbes Infect 2000,2(1):55–60.PubMedCrossRef 2.

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Microbiol 1998,1(1):96–102.PubMedCrossRef 7. Kuipers E, Israel D, Kusters J, Gerrits M, Weel J, van Der Ende A, van Der Hulst R, Wirth H, Höök-Nikanne J, Thompson S, et al.: Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host. J Infect Dis 2000,181(1):273–282.PubMedCrossRef 8. Nedenskov-Sørensen P, Bukholm G, Bøvre K: Natural competence for genetic transformation in Campylobacter pylori. J Infect Dis 1990,161(2):365–366.PubMedCrossRef 9. Smeets selleck chemicals L, Kusters J: Natural transformation in Helicobacter pylori: DNA transport in an unexpected way. Trends Microbiol 2002,10(4):159–162.PubMedCrossRef 10. McClain MS, Shaffer CL, Israel DA, Peek RMJ, Cover TL: Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer. BMC Genomics 2009, 10:3.PubMedCrossRef 11. Falush D, Wirth T, Linz B, Pritchard J, Stephens M, Kidd M, Blaser M, Graham D, Vacher S, Perez-Perez G, et al.: Traces of human migrations in Helicobacter pylori populations. Science 2003,299(5612):1582–1585.PubMedCrossRef 12.

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